PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4416s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 158aa    MW: 17435.8 Da    PI: 6.6542
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4416s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26022.14.4e-072653496
               DUF260 34 hklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96
                         h+ F++ nv+++l++l ++e++e+a+++  y A+a+  + ++G+ ++il+++  l+++++ +++
  Araha.4416s0003.1.p  2 HQDFRVVNVCNILDNLeSPEQHEIAANCQRYAAKACRCNSISGCPAMILHYNCILNSVEQGIKS 65
                         7779************6778899*****************************999998877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.145170IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4264IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
IHQDFRVVNV CNILDNLESP EQHEIAANCQ RYAAKACRCN SISGCPAMIL HYNCILNSVE  60
QGIKSAINEF GTYVGPDQVS KFYDFPMPAD FLTTSGFLDS FLEKIKNLNA VKKNQLMQLL  120
AADARMIMNK IFWSRKDQKM DDGHGHGADG ASTSSGQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869811.15e-74hypothetical protein ARALYDRAFT_914342
SwissprotO496517e-63LBD32_ARATH; LOB domain-containing protein 32
TrEMBLD7ME155e-74D7ME15_ARALL; Putative uncharacterized protein
STRINGscaffold_702084.11e-73(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.11e-56LOB domain-containing protein 32